Majora's Mask
Ogre Battle 64
Castlevania Bloodlines
Rondo of Blood
Terranigma

Rondo of Blood
Castlevania Bloodlines (even though I own the cart, it would be nice for the suspension save.)
Terranigma
Crusader of Centy (goes for an arm and a leg on ebay)
Splatterhouse 3

In no particular order (I didn't put Earthbound on here because that's a given):
1.) Zombies Ate My Neighbors (SNES version, please!)
2.) Guardian Heroes (Give me Saturn Games!)
3.) Parodius
4.) Star Fox
5.) Sonic and Knuckles

1. Base Wars (NES)
2. Paperboy (NES)
3. Contra (NES)
4. Battle Clash 1 & 2 (SNES)
5. Killer Instinct Gold (N64)
Runner Up. Maniac Mansion (NES)

1. Earthbound
2. Paperboy
3. Shadowrun (SGEN Version)
4. Bust-a-Move
5. Since they're all basically the same, I'm listing Shadowgate, Deja Vu, and The Uninvited all under #5.

1. Super Smash Bros. (N64)
2. Mario Tennis (N64)
3. Donkey Kong (N64)
4. Final Fantasy Saga (NES/SNES)
5. Super Mario Kart (SNES)
6. Star Fox (SNES)

Okay, it's 6, but there are so many good games that should be on the VC right now.

1. Super Mario All-Stars (SNES)
2. Yoshi's Island (SNES)
3. DK64 (N64)
4. Banjo-Kazooie (N64)
5. Banjo-Tooie (N64)

I know I have more than 5 but who cares?
Super Mario Kart (SNES)
Super Smash Bros (N64)
Majoras Mask (N64)
Starfox (SNES)
Sonic CD (Sega Genesis/CD)
DK64 (N64)
Mario Tennis (N64)
Mario Kart Arcade GP (Arcade)
Super Mario World 2: Yoshi's Island (SNES)
and any other good rare N64 game

What about?

Chip and dale
Duck tales
blaster master
battletoads
Little nemo the dreammaster (Best 8-bit ever?)

Top 5? Where the HELL do I begin, you know what I'll have top 26 too
26. Batman (NES) Probably not do to licensing issues.
25. Body Harvest (N64) Its a great game, I have it for the N64 and I love it.
24. Resident Evil 2 (N64) Capcom does support the VC, so I see no reason not to release it.
23. Doom (SNES) This is if id ever supports the VC.
22. Killer Instinct (SNES) I doubt it do to Rare and Micrsosoft
21. Mario Tennis (N64) I love the Wii remake of the Gamecube title, so why not.
20. Keith Courage (TG16) Where the hell is it Hudson?
19. Earthworm Jim 2 (SNES) I like the original, but Would like to see the second one on VC but the SNES version.
18. Earthworm Jim 3D (N64) I'll try it
17. Return Fire (3DO) I wouldn't mind seeing a few 3DO games, especially the game that is supposed to be its best game.
16. Kirby Superstar (SNES) I would love to see the original come to the VC.
15. Tetris (NES) What more do I have to say.
14. Dr. Mario 64 (N64) I'm a sucker for Dr. Mario.
13. Sonic CD (Sega CD) Lets see some Sonic!
12. Super Street Fighter II: Turbo (3DO) Curosity Sake.
11. Tempest 2000 (Jaguar) Probably the only good Jaguar game other than Alien Vs. Predator.
10. Chrono Trigger (SNES) Like to see the original cheap on VC
9. Final Fantasy (NES) I would like to see every Final Fantasy on VC.
8. Final Fantasy IV (SNES) See Above.
7. Fianl Fantasy VI (SNES) See Above.
6. Super Mario Kart (SNES) The one that started them all.
5. Super Mario World 2: Yoshi's Island (SNES) Come on Nintendo!
4. Super Smash Bros. (N64) I love Smash Bros.
3. Mother (NES) Translated version does exist inside NES Zelda II Cartiridge.
2. Donkey Kong 64 (N64) Love to see this great game come.
1. Earthbound (SNES) HELL YEAH!

Chip and Dale & Ducktales were awesome! I played the heck out of those as a kid.

How about a Top 10 instead:

1. Chrono Trigger (SNES) - I know there's a DS remake but the original version is welcome too.
2. Earthbound (SNES) - I hope they can work things out with the copyright issues.
3. Blaster Master (NES) - Great NES game!
4. Super Mario World 2: Yoshi's Island (SNES) - It shouldn't be too hard to emulate the Super FX chip.
5. Donkey Kong 64 (N64) - If the DKC trilogy can be released then why can't DK64?
6. Super Mario Kart (SNES) - MK64 gets released but not SMK?
7. GoldenEye 007 (N64) - Seems next to impossible to release this games since it was headed XBLA then canceled.
8. Contra (NES) - Release this game already, Nintendo!
9. Castlevania: Rondo of Blood (TG-CD) - Would be the best import since SMB2:LL and S&P!
10. Teenage Mutant Ninja Turtles IV: Turtles in Time (SNES) - Forget TMNT 2&3, just release this one instead!

A Boy and His Blob
Gauntlet
Maniac Mansion
Faxanadu
Wizards & Warriors (I II or III)

1. Master of Monsters (Sega Genesis)
2. Contra (any)
3. Rygar (NES)
4. Ogre Battle 64
5. Hogans Alley/Duck Hunt combination (NES)

1. Goldeneye 007 64
2. Perfect dark 64
3. Super Smash Bros 64
4.Greatest Heavyweights Sega Genesis
5. Majora's Mask
There's more games that i like but like to see these five in the virtual console

Hybrid Heaven (N64)
Mischief Makers (N64)
Earthbound (SNES)
Aidyn Chronicles (N64)
Rainbow Six (N64)

Yeah, I Know Most of Them are 64 Games, but The 64 was My Favorite System, and Eathbound is a Classic

EarthBound (SNES)
Terannigma (SNES)
Majora's Mask (N64)
Chrono Trigger (SNES)
Final Fantasy (NES)

Nice. I was worried I was the only one who played that bizarre game!

Fighter's Destiny
Mario Tennis
Sonic & Knuckles
Earthworm Jim 2
Kirby's Fun Pak

Not really a top 5, but...
1. Super Smash Bros.
2. Majora's Mask
3. Aidyn Chronicles (@EasterOfDays: Oh hecks yeah!)
4. Phantasy Star
5. Donkey Kong 64
6. Mother
7. Gauntlet Legends
8. Sonic & Knuckles
9. Any of the other TMNT games
10. Duck Hunt
11. Ys III
12. Sonic CD
13. Castlevania 64
14. Star Fox
15. Super Mario World 2: Yoshi's Island
16. Bomberman 64
17. Tass Times In Tonetown (Point & click for C64)
18. Nazo No Murasamejou (Import)
19. Transformers: Convoy No Nazo (Import)
20. Paperboy (N64)
21. Super Mario Kart
22. Mario Tennis
23. Mega Man 64
24. Dragon Quest (Warrior)
25. Pilotwings (Both versions)
26. Final Fantasy
27. Pokèmon Stadium

That should do for now. Not necessarily in any order, of course.