Majora's Mask.

Dang it, I can't pick between A Link to the Past or Wind Waker. Wind Waker was more recent though so go with that I guess...

Link's Awakening and the N64 Zeldas.

From best to worst:
1. Link's Awakening
2. Majora's Mask
3. Ocarina of Time
4. Wind Waker
5. Four Swords Adventures
6. Oracle of Seasons
7. Oracle of Ages
8. The Legend of Zelda
9. A Link to the Past.
10. Minish Cap
11. Zelda II: Adventure of Link
12. Phantom Hourglass
13. Twilight Princess (Yuck).

In order of best to least favorite, the ones I've played:
1. Wind Waker
2. Ocarina of Time
3. Twilight Princess
Gap in between
4. Minish Cap
5. Majora's Mask
6. Phantom Hourglass
7. A Link to the Past

Mine would be Wind Waker if you didn't have to collect the stupid Triforce at the end. But I haven't played any of the handheld Zelda's (except PH) so I can't say. I do remember having fond memories of Four Swords though

1) Majora's Mask
2) A Link to the Past
3) The Wind Waker
4) Ocarina of Time
Gap so vast it'd take you 14 years to cross it traveling at light speed
5) Twilight Princess
6) Zelda II: The Adventure of Link
7) The Legend of Zelda

Leaving out the hand-helds as I don't have experience with all of them, and I'm a perfectionist that way. Also you could mix up the bottom three any which way you like and it wouldn't bother me.

1. Link's Awakening
2. A Link to the Past
3. Oracle of Seasons
4. Oracle of Ages
5. Majora's Mask (would probably be higher if I played more of it)
6. Ocarina of Time
7. The Legend of Zelda
8. Phantom Hourglass
9. Twilight Princess
10. Minish Cap
11. Zelda II
12. 4 Swords Adventures

Wand of Gamelon.

Ahh! It's so hard!

1. Wind Waker, Ocarina of Time, maybe Twilight Princess?
2. Phantom Hourglass, Four Swords Adventure, Majora's Mask.
3. A link to the Past.
I think that's all that I've played?

Majora's Mask.

I don't like zelda a whole lot so I can't really say, but my brother's is link to the past.